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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
single cell RNA-seq
52
ChIP-seq
49
total RNA-seq
4
RRBS
2
STARR-seq
1
Hi-C
Assay category
DNA accessibility
108
Transcription
52
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
12
control
10
transcription factor
7
recombinant protein
3
RNA binding protein
Date released
60
August, 2021
47
September, 2023
23
April, 2019
21
October, 2019
5
May, 2019
4
July, 2019
3
June, 2019
3
May, 2023
1
December, 2019
Available data
64
bam
57
txt
51
bigWig
39
bed narrowPeak
24
bigBed narrowPeak
tsv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
167
Homo sapiens
Biosample type
137
tissue
18
primary cell
12
cell line
Organ
588
liver
355
pancreas
242
epithelium
223
brain
172
connective tissue
167
kidney
148
heart
109
vasculature
105
blood vessel
89
bone element
82
adipose tissue
71
limb
60
blood
60
bodily fluid
52
musculature of body
35
nerve
34
artery
24
eye
23
embryo
22
spleen
18
vein
9
lung
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
thymus
Project
120
AMP
47
KPMP
Genome assembly (visualization)
44
hg19
39
GRCh38
Lab
61
Katalin Susztak, Upenn
57
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
17
inconsistent ontology term
audit.ERROR.category!
audit script error
assay_slims!
DNA accessibility
files.file_type!
tsv
BIOSAMPLE
ASSAY
167 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
RRBS
STARR-seq
Hi-C
tissue
kidney
59
27
49
1
1
primary cell
epithelial cell of proximal tubule
10
1
kidney epithelial cell
5
1
renal cortical epithelial cell
1
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
HEK293T
2
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