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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
36
DNase-seq
9
ATAC-seq
8
snATAC-seq
total RNA-seq
4
Hi-C
1
WGBS
Assay category
126
DNA binding
53
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
51
transcription factor
50
histone
50
histone modification
34
broad histone mark
23
control
16
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
65
October, 2019
32
June, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
7
May, 2019
6
February, 2021
5
July, 2019
1
January, 2018
Available data
170
bam
146
bed narrowPeak
142
bigWig
138
bigBed narrowPeak
60
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
184
Homo sapiens
Biosample type
115
tissue
61
cell line
8
primary cell
Organ
602
liver
539
pancreas
388
epithelium
321
heart
287
kidney
269
brain
210
connective tissue
174
vasculature
168
blood vessel
115
limb
97
bone element
93
adipose tissue
89
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
21
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
176
AMP
8
T1D
Genome assembly (visualization)
147
hg19
146
GRCh38
Lab
176
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
audit.ERROR.category!
audit script error
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
184 results
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ChIP-seq
DNase-seq
ATAC-seq
snATAC-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
+ See 9 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
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