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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
477
ChIP-seq
163
total RNA-seq
41
DNase-seq
31
ATAC-seq
3
Hi-C
3
small RNA-seq
2
RRBS
1
pCHi-C
Assay category
477
DNA binding
166
Transcription
72
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
329
transcription factor
131
histone modification
130
histone
78
recombinant protein
66
narrow histone mark
64
broad histone mark
55
RNA binding protein
23
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
170
May, 2020
59
October, 2019
50
December, 2017
49
November, 2018
34
June, 2019
20
August, 2017
20
May, 2022
18
August, 2021
9
July, 2019
8
February, 2021
6
May, 2019
5
December, 2019
5
January, 2019
2
March, 2020
Available data
707
bigWig
681
bam
529
bed narrowPeak
438
bigBed narrowPeak
390
fastq
166
tsv
99
bed broadPeak
99
bigBed broadPeak
49
bed bed3+
42
tagAlign
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
Organism
721
Homo sapiens
Biosample type
364
tissue
330
cell line
14
in vitro differentiated cells
13
primary cell
Organ
655
pancreas
625
liver
589
connective tissue
426
adipose tissue
307
epithelium
188
heart
164
brain
164
vasculature
158
blood vessel
129
kidney
96
limb
93
artery
72
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
16
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
721
AMP
Genome assembly (visualization)
721
hg19
627
GRCh38
Lab
686
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
721 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
small RNA-seq
RRBS
pCHi-C
tissue
liver
83
147
2
20
1
1
1
tibial nerve
24
4
2
1
tibial artery
18
2
1
muscle of leg
6
13
muscle of arm
17
+ See 9 more…
cell line
HepG2
322
5
1
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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