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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
total RNA-seq
157
ChIP-seq
8
Hi-C
6
WGBS
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
200
Transcription
157
DNA binding
8
3D chromatin structure
8
DNA methylation
1
DNA accessibility
1
DNA sequencing
Target of assay
125
control
23
histone
23
histone modification
13
broad histone mark
10
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
167
May, 2020
66
November, 2017
36
August, 2017
22
October, 2019
20
May, 2022
18
August, 2021
15
July, 2019
13
December, 2017
5
December, 2019
5
January, 2019
4
February, 2020
3
March, 2020
2
February, 2021
2
November, 2018
1
December, 2018
1
May, 2019
Available data
795
bam
713
bigWig
bed narrowPeak
465
fastq
442
bigBed narrowPeak
181
tsv
99
bed broadPeak
99
bigBed broadPeak
86
tagAlign
49
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
380
Homo sapiens
Biosample type
278
tissue
93
cell line
8
primary cell
1
in vitro differentiated cells
Organ
728
pancreas
609
connective tissue
478
adipose tissue
368
epithelium
350
liver
202
heart
164
kidney
151
bone element
102
vasculature
100
blood vessel
83
brain
67
artery
35
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
8
skeleton
8
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
380
AMP
Genome assembly (visualization)
192
hg19
169
GRCh38
Lab
343
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
audit.ERROR.category!
audit script error
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
380 results
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total RNA-seq
ChIP-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
63
1
3
1
1
1
1
tibial nerve
5
11
right lobe of liver
3
3
1
2
1
tibial artery
1
5
gastrocnemius medialis
1
4
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cell line
HepG2
14
71
2
1
2
2
1
primary cell
hepatocyte
5
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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