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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
280
ChIP-seq
196
total RNA-seq
42
DNase-seq
31
ATAC-seq
8
Hi-C
6
WGBS
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
280
DNA binding
200
Transcription
73
DNA accessibility
8
3D chromatin structure
8
DNA methylation
1
DNA sequencing
Target of assay
transcription factor
152
histone modification
151
histone
125
control
82
recombinant protein
76
broad histone mark
75
narrow histone mark
58
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
194
May, 2020
76
October, 2019
74
November, 2017
50
August, 2017
40
May, 2022
34
June, 2019
30
December, 2017
24
August, 2021
15
July, 2019
9
February, 2021
7
May, 2019
5
December, 2019
5
January, 2019
4
February, 2020
4
November, 2018
3
March, 2020
1
December, 2018
Available data
469
bam
380
bigWig
204
bed narrowPeak
181
tsv
138
fastq
128
bigBed narrowPeak
86
tagAlign
55
bed broadPeak
55
bigBed broadPeak
47
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
575
Homo sapiens
Biosample type
444
tissue
104
cell line
14
primary cell
13
in vitro differentiated cells
Organ
923
pancreas
644
connective tissue
510
epithelium
474
adipose tissue
453
liver
376
heart
337
kidney
283
brain
226
vasculature
221
blood vessel
159
bone element
136
artery
122
limb
95
musculature of body
60
eye
43
nerve
34
embryo
21
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
575
AMP
Genome assembly (visualization)
392
hg19
341
GRCh38
Lab
515
AMP-T2D consortium
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
audit.ERROR.category!
audit script error
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
575 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
108
167
2
20
1
3
1
1
1
1
tibial nerve
35
5
2
1
tibial artery
23
1
2
1
muscle of leg
7
13
1
muscle of arm
17
+ See 11 more…
cell line
HepG2
81
14
1
2
1
2
2
1
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
13
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