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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
Assay category
49
DNA binding
44
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
49
histone
49
histone modification
34
broad histone mark
control
15
narrow histone mark
Date released
53
October, 2019
32
June, 2019
6
February, 2021
6
May, 2019
4
July, 2019
3
February, 2020
Available data
97
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
bigBed bedMethyl
Organism
104
Homo sapiens
Biosample type
104
tissue
Organ
883
pancreas
680
liver
646
connective tissue
483
epithelium
465
adipose tissue
331
kidney
325
heart
253
brain
211
vasculature
207
blood vessel
159
bone element
132
artery
104
limb
85
musculature of body
63
blood
63
bodily fluid
59
eye
32
nerve
30
embryo
20
lung
19
vein
18
ureter
16
skeleton
15
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
104
AMP
Genome assembly (visualization)
96
hg19
95
GRCh38
Lab
104
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.ERROR.category!
audit script error
target.investigated_as!
control
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
24
2
1
5
tibial artery
18
2
1
1
muscle of leg
6
13
muscle of arm
17
gastrocnemius medialis
1
4
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