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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
DNase-seq
25
ChIP-seq
7
ATAC-seq
4
Hi-C
2
total RNA-seq
1
WGBS
Assay category
41
DNA accessibility
25
DNA binding
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
25
histone
25
histone modification
18
broad histone mark
7
narrow histone mark
control
Date released
32
June, 2019
22
October, 2019
6
February, 2021
6
May, 2019
5
July, 2019
2
February, 2020
Available data
66
bam
65
bed narrowPeak
60
bigWig
58
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
2
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
73
Homo sapiens
Biosample type
73
tissue
Organ
889
pancreas
683
liver
649
connective tissue
489
epithelium
467
adipose tissue
335
kidney
333
heart
255
brain
213
vasculature
208
blood vessel
159
bone element
132
artery
105
limb
89
musculature of body
63
blood
63
bodily fluid
60
eye
nerve
30
embryo
20
lung
19
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
73
AMP
Genome assembly (visualization)
65
GRCh38
65
hg19
Lab
73
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.ERROR.category!
audit script error
target.investigated_as!
control
organ_slims!
nerve
BIOSAMPLE
ASSAY
73 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
tissue
tibial artery
2
18
1
1
muscle of leg
13
6
1
muscle of arm
17
gastrocnemius medialis
4
1
distal epiphysis of femur
1
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