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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
total RNA-seq
98
ChIP-seq
38
DNase-seq
14
ATAC-seq
7
WGBS
4
Hi-C
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
408
Transcription
98
DNA binding
52
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
81
histone
81
histone modification
54
broad histone mark
control
27
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
392
February, 2021
54
October, 2019
51
August, 2017
33
June, 2019
17
July, 2019
6
May, 2019
5
February, 2020
5
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
520
bam
516
bigWig
408
tsv
105
bed narrowPeak
94
bigBed narrowPeak
42
bed bed3+
39
bed broadPeak
38
bigBed broadPeak
25
fastq
7
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
571
Homo sapiens
Biosample type
569
tissue
2
primary cell
1
in vitro differentiated cells
Organ
889
pancreas
683
liver
649
connective tissue
489
epithelium
467
adipose tissue
335
kidney
333
heart
255
brain
213
vasculature
208
blood vessel
159
bone element
132
artery
105
limb
89
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
19
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
572
AMP
Genome assembly (visualization)
522
hg19
520
GRCh38
Lab
572
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
audit.ERROR.category!
audit script error
target.investigated_as!
control
BIOSAMPLE
ASSAY
572 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
31
3
tibial nerve
5
24
2
1
tibial artery
1
18
2
1
muscle of leg
6
13
1
+ See 16 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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