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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
32
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
44
DNA accessibility
32
DNA binding
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
broad histone mark
17
control
15
narrow histone mark
Date released
39
October, 2019
32
June, 2019
6
February, 2021
5
July, 2019
3
February, 2020
3
May, 2019
Available data
80
bam
58
bed narrowPeak
57
bigWig
50
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
88
Homo sapiens
Biosample type
88
tissue
Organ
832
pancreas
736
liver
623
connective tissue
464
epithelium
459
adipose tissue
336
heart
332
kidney
215
brain
190
vasculature
184
blood vessel
159
bone element
127
artery
88
limb
75
musculature of body
69
blood
69
bodily fluid
61
eye
32
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
12
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
62
GRCh38
62
hg19
Lab
88
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.ERROR.category!
audit script error
target.investigated_as!
broad histone mark
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
88 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
2
19
1
5
muscle of arm
17
muscle of leg
13
3
1
tibial artery
2
9
1
1
gastrocnemius medialis
1
4
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