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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1015
total RNA-seq
448
ChIP-seq
244
ATAC-seq
174
DNase-seq
169
single cell RNA-seq
85
RNA microarray
27
WGBS
26
snATAC-seq
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1200
Transcription
448
DNA accessibility
448
DNA binding
38
DNA methylation
15
3D chromatin structure
Target of assay
460
histone modification
459
histone
broad histone mark
195
narrow histone mark
160
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
540
February, 2021
229
August, 2021
211
August, 2017
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
95
February, 2023
77
July, 2019
65
May, 2022
59
May, 2019
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
March, 2020
40
May, 2021
40
November, 2017
40
November, 2019
26
November, 2018
25
February, 2020
20
May, 2024
19
April, 2020
15
May, 2023
13
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
January, 2019
2
January, 2018
1
December, 2019
Available data
1538
bam
1398
bigWig
1061
tsv
619
bed narrowPeak
340
bigBed narrowPeak
332
fastq
194
bed bed3+
189
bed broadPeak
172
bigBed broadPeak
151
txt
113
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
1
bedpe
1
csv
Organism
2257
Homo sapiens
Biosample type
2262
tissue
914
primary cell
617
cell line
328
in vitro differentiated cells
9
stem cell
Organ
525
connective tissue
467
adipose tissue
460
pancreas
333
liver
278
kidney
251
heart
158
bone element
112
brain
85
blood vessel
85
vasculature
65
musculature of body
49
limb
47
artery
35
eye
21
spleen
20
lung
18
ureter
16
skeleton
14
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2165
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1495
GRCh38
1432
hg19
Lab
1930
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
audit.ERROR.category!
audit script error
target.investigated_as!
broad histone mark
month_released!
October, 2019
BIOSAMPLE
ASSAY
2262 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
284
36
55
1
6
3
1
1
4
adipose tissue
382
2
2
3
1
liver
166
121
20
2
1
3
1
1
1
1
kidney
49
13
75
13
59
6
1
1
1
bone element
84
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