Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
19
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
34
DNA accessibility
19
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
broad histone mark
13
narrow histone mark
6
control
Date released
39
June, 2019
14
August, 2017
10
July, 2019
5
March, 2020
3
May, 2019
2
February, 2020
1
January, 2018
1
May, 2022
Available data
52
bigWig
49
bam
44
bed narrowPeak
39
bigBed narrowPeak
38
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
9
tsv
7
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
75
Homo sapiens
Biosample type
65
tissue
10
primary cell
Organ
850
pancreas
745
liver
636
connective tissue
470
adipose tissue
453
epithelium
331
heart
305
kidney
167
vasculature
161
blood vessel
159
bone element
133
brain
115
artery
75
musculature of body
69
blood
69
bodily fluid
49
limb
40
eye
33
embryo
21
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
75
AMP
Genome assembly (visualization)
56
hg19
45
GRCh38
Lab
75
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
target.investigated_as!
broad histone mark
month_released!
October, 2019
BIOSAMPLE
ASSAY
75 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
10
1
4
1
1
1
muscle of arm
17
muscle of leg
13
3
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
4
1
1
skeletal muscle cell
1
2
1
See all biosamples
Download