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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
813
ChIP-seq
260
ATAC-seq
178
DNase-seq
169
single cell RNA-seq
85
RNA microarray
27
WGBS
26
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1222
Transcription
813
DNA binding
468
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
540
February, 2021
261
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
111
May, 2019
95
February, 2023
82
November, 2017
77
July, 2019
74
April, 2019
65
May, 2022
59
October, 2018
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
35
May, 2024
25
February, 2020
23
October, 2017
19
April, 2020
19
November, 2018
17
December, 2017
15
May, 2023
8
January, 2021
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
2
January, 2018
1
December, 2019
Available data
1818
bam
1679
bigWig
1069
tsv
909
bed narrowPeak
496
bigBed narrowPeak
298
fastq
238
tagAlign
213
bed broadPeak
191
bed bed3+
176
bigBed broadPeak
151
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2665
Homo sapiens
Biosample type
2674
tissue
1047
primary cell
343
in vitro differentiated cells
301
cell line
10
stem cell
Organ
530
connective tissue
487
pancreas
471
adipose tissue
322
liver
301
heart
291
kidney
265
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
81
musculature of body
72
artery
56
eye
43
nerve
20
lung
19
spleen
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2577
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1766
GRCh38
1666
hg19
Lab
2327
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
audit script error
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
audit script error
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
2674 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
64
68
1
6
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
108
20
2
1
3
1
1
1
1
kidney
49
26
75
13
59
6
1
1
1
bone element
84
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