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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
93
single cell RNA-seq
68
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
162
Transcription
113
DNA binding
74
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
transcription factor
10
RNA binding protein
Date released
92
August, 2021
62
February, 2021
52
April, 2019
36
February, 2023
35
May, 2024
27
June, 2019
20
July, 2019
19
May, 2019
8
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
Available data
198
bigWig
188
bam
169
bed narrowPeak
164
tsv
81
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
2
tagAlign
Organism
364
Homo sapiens
Biosample type
301
tissue
62
cell line
primary cell
1
in vitro differentiated cells
Organ
606
connective tissue
580
pancreas
472
adipose tissue
439
liver
364
heart
303
kidney
265
brain
192
blood vessel
192
vasculature
158
bone element
134
artery
122
limb
113
epithelium
81
musculature of body
56
eye
43
nerve
34
embryo
20
lung
19
spleen
18
ureter
16
skeleton
10
blood
10
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
364
AMP
Genome assembly (visualization)
240
GRCh38
167
hg19
Lab
329
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
audit.ERROR.category!
audit script error
target.investigated_as!
transcription factor
biosample_type!
primary cell
BIOSAMPLE
ASSAY
364 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
30
18
3
2
3
4
1
1
1
left cardiac atrium
35
18
1
coronary artery
4
1
36
2
heart
14
1
4
18
1
1
1
heart right ventricle
13
17
1
1
2
1
1
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cell line
smooth muscle cell of the coronary artery
2
52
8
in vitro differentiated cells
cardiac fibroblast
1
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