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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
Assay category
28
DNA binding
Target of assay
986
histone modification
985
histone
498
narrow histone mark
489
transcription factor
486
broad histone mark
343
control
108
RNA binding protein
88
recombinant protein
23
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
11
November, 2017
6
January, 2019
5
November, 2018
3
December, 2017
2
December, 2018
1
August, 2017
Available data
28
bam
28
bed narrowPeak
28
bigBed narrowPeak
28
bigWig
28
fastq
5
bed broadPeak
5
bigBed broadPeak
Organism
28
Homo sapiens
Biosample type
21
cell line
5
tissue
1
in vitro differentiated cells
1
primary cell
Organ
14
liver
10
blood
10
bodily fluid
3
spleen
1
epithelium
Project
28
AMP
Genome assembly (visualization)
28
hg19
27
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
audit script error
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
cell line
HepG2
11
GM12878
10
tissue
spleen
3
liver
2
in vitro differentiated cells
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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