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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
88
ChIP-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
342
Transcription
136
DNA accessibility
88
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
136
May, 2021
81
February, 2023
56
September, 2020
47
September, 2023
45
May, 2020
33
May, 2022
12
February, 2021
9
April, 2020
7
March, 2020
4
March, 2023
Available data
186
bam
186
bigWig
126
fastq
98
tsv
88
bed narrowPeak
84
tagAlign
52
zippedFastqFolder
Organism
426
Homo sapiens
Biosample type
357
primary cell
65
tissue
6
cell line
2
stem cell
Organ
66
pancreas
57
epithelium
47
kidney
9
lung
Project
AMP
193
T1D
177
HPAP
47
KPMP
9
LungMap
4
community
Genome assembly (visualization)
186
GRCh38
186
hg19
Lab
185
Kyle Gaulton, UCSD
177
Klaus Kaestner, Upenn
47
KPMP
9
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
8
inconsistent ontology term
audit.ERROR.category!
inconsistent control
award.project!
AMP
BIOSAMPLE
ASSAY
430 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
Langerhans cell
85
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
+ See 24 more…
tissue
kidney
47
islet of Langerhans
7
2
lung
9
cell line
EndoC_BH1
2
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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