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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
single cell RNA-seq
88
ChIP-seq
60
ATAC-seq
49
snATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
201
Transcription
109
DNA accessibility
88
DNA binding
47
DNA methylation
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
101
May, 2022
99
February, 2023
45
May, 2020
19
September, 2020
16
January, 2021
10
April, 2020
7
August, 2020
7
March, 2020
6
February, 2021
5
March, 2023
Available data
196
bigWig
186
bam
108
fastq
104
tsv
101
zippedFastqFolder
88
bed narrowPeak
84
tagAlign
1
hic
Organism
463
Homo sapiens
Biosample type
414
primary cell
41
tissue
11
cell line
2
stem cell
Organ
183
pancreas
153
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
244
T1D
209
HPAP
10
LungMap
4
community
1
ITG
Genome assembly (visualization)
197
GRCh38
186
hg19
Lab
236
Kyle Gaulton, UCSD
209
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
audit script error
9
inconsistent ontology term
audit.ERROR.category!
inconsistent control
audit script error
award.project!
AMP
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
468 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
Langerhans cell
21
+ See 37 more…
tissue
islet of Langerhans
7
2
11
6
lung
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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