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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
ChIP-seq
164
total RNA-seq
129
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
16
pCHi-C
10
RRBS
4
DNase-seq
3
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
279
Transcription
206
DNA binding
190
DNA accessibility
11
DNA methylation
3
3D chromatin structure
Target of assay
176
histone
176
histone modification
94
broad histone mark
82
narrow histone mark
23
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
41
February, 2021
40
September, 2020
32
October, 2019
31
June, 2019
27
July, 2019
18
August, 2017
11
July, 2018
10
April, 2018
9
November, 2017
8
January, 2021
5
December, 2019
5
May, 2019
5
November, 2020
2
June, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
421
bigWig
415
bam
227
bed narrowPeak
162
tsv
151
fastq
100
tagAlign
87
bigBed narrowPeak
73
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
705
Homo sapiens
Biosample type
2067
tissue
705
primary cell
568
cell line
366
in vitro differentiated cells
7
stem cell
Organ
385
epithelium
pancreas
31
connective tissue
29
vasculature
26
kidney
25
blood vessel
20
vein
13
brain
13
musculature of body
10
heart
8
blood
8
bodily fluid
8
liver
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
328
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
413
hg19
314
GRCh38
Lab
295
AMP-T2D consortium
237
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
46
inconsistent ontology term
28
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
audit.ERROR.category!
inconsistent control
organ_slims!
pancreas
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
705 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
RRBS
DNase-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
exocrine cell
39
CD8-positive, alpha-beta T cell
33
2
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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