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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
350
ChIP-seq
177
DNase-seq
4
FAIRE-seq
3
ATAC-seq
Assay category
350
DNA binding
184
DNA accessibility
Target of assay
312
histone
312
histone modification
204
broad histone mark
108
narrow histone mark
38
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
Date released
163
June, 2019
93
May, 2019
64
April, 2019
57
November, 2017
47
October, 2019
45
October, 2018
22
August, 2017
17
November, 2018
9
December, 2017
6
January, 2019
6
October, 2017
3
December, 2018
2
July, 2019
Available data
1880
bam
1705
bigWig
1076
tsv
917
bed narrowPeak
534
bigBed narrowPeak
350
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
528
Homo sapiens
Biosample type
534
tissue
354
cell line
109
primary cell
17
in vitro differentiated cells
Organ
116
brain
88
heart
87
kidney
84
limb
62
blood vessel
62
pancreas
62
vasculature
38
musculature of body
26
nerve
25
artery
22
liver
18
ureter
13
spleen
10
adipose tissue
10
connective tissue
3
eye
Project
534
AMP
Genome assembly (visualization)
528
GRCh38
466
hg19
Lab
534
AMP-T2D consortium
Audit category:
inconsistent control
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
534 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
heart
7
18
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