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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
single cell RNA-seq
7
ATAC-seq
Assay category
8
Transcription
7
DNA accessibility
Date released
10
February, 2021
3
February, 2023
1
November, 2018
1
September, 2018
Available data
3364
bam
3141
bigWig
1789
bed narrowPeak
1600
tsv
1330
fastq
1014
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
15
Homo sapiens
Biosample type
7
in vitro differentiated cells
6
tissue
2
primary cell
Organ
5
kidney
4
connective tissue
1
liver
Project
15
AMP
Genome assembly (visualization)
7
hg19
Lab
12
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
5
audit script error
1
inconsistent ontology term
audit.ERROR.category!
inconsistent control
files.file_type!
tar
BIOSAMPLE
ASSAY
15 results
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single cell RNA-seq
ATAC-seq
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
tissue
kidney
5
liver
1
primary cell
pancreatic cell
2
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