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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
7
single cell RNA-seq
4
Hi-C
2
RNA microarray
Assay category
27
DNA accessibility
7
Transcription
4
3D chromatin structure
Date released
32
February, 2021
4
December, 2019
3
October, 2022
August, 2022
1
October, 2019
Available data
27
fastq
9
tsv
6
txt
5
csv
4
hic
3
bedpe bed3+
3
cool
bed bed3+
Organism
40
Homo sapiens
Biosample type
31
primary cell
7
tissue
2
in vitro differentiated cells
Organ
7
kidney
5
epithelium
3
pancreas
1
blood vessel
1
vasculature
1
vein
Project
30
HPAP
10
AMP
Genome assembly (visualization)
4
hg19
Lab
30
Klaus Kaestner, Upenn
10
AMP-T2D consortium
Audit category:
347
inconsistent ontology term
40
audit script error
inconsistent control
1
inconsistent replicate
audit.ERROR.category!
inconsistent control
month_released!
August, 2022
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
40 results
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snATAC-seq
single cell RNA-seq
Hi-C
RNA microarray
primary cell
Langerhans cell
27
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
kidney
5
kidney interstitium
1
renal glomerulus
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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