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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
10
total RNA-seq
6
Hi-C
5
ATAC-seq
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA accessibility
39
DNA binding
13
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
10
July, 2019
February, 2021
8
February, 2023
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
5
txt
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
104
Homo sapiens
Biosample type
90
tissue
14
primary cell
Organ
914
pancreas
761
liver
492
epithelium
346
kidney
327
heart
286
brain
229
connective tissue
170
vasculature
164
blood vessel
116
limb
105
adipose tissue
96
musculature of body
75
artery
68
blood
68
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
104
AMP
Genome assembly (visualization)
77
hg19
53
GRCh38
Lab
104
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent control
month_released!
February, 2021
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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