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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
4
ATAC-seq
2
total RNA-seq
1
Hi-C
Assay category
74
DNA binding
4
DNA accessibility
2
Transcription
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
29
control
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
67
December, 2017
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
77
bam
61
fastq
47
bigWig
45
bed narrowPeak
45
bigBed narrowPeak
2
tsv
1
bed broadPeak
1
bedpe
1
hic
Organism
81
Homo sapiens
Biosample type
79
tissue
2
primary cell
Organ
58
pancreas
23
adipose tissue
23
connective tissue
2
epithelium
Project
81
AMP
Genome assembly (visualization)
50
hg19
49
GRCh38
Lab
76
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
1
inconsistent control read length
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
81 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
body of pancreas
33
endocrine pancreas
16
subcutaneous adipose tissue
12
omental fat pad
11
islet of Langerhans
4
1
+ See 1 more…
primary cell
pancreatic acinar cell
2
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