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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
215
DNA binding
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
RNA binding protein
3
transcription factor
Date released
88
November, 2017
85
October, 2019
28
May, 2019
16
July, 2019
15
October, 2017
12
February, 2020
2
March, 2020
Available data
205
bam
184
bigWig
167
bed narrowPeak
118
tagAlign
91
bigBed narrowPeak
26
tsv
15
fastq
12
bed broadPeak
3
bed bed3+
3
bigBed broadPeak
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
246
Homo sapiens
Biosample type
233
tissue
13
primary cell
Organ
764
pancreas
677
liver
640
connective tissue
478
adipose tissue
393
epithelium
305
heart
246
brain
188
kidney
173
vasculature
170
blood vessel
147
bone element
91
artery
78
limb
61
musculature of body
49
blood
49
bodily fluid
40
nerve
37
embryo
28
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
246
AMP
Genome assembly (visualization)
180
GRCh38
137
hg19
Lab
246
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
audit.ERROR.category!
inconsistent control
assay_slims!
DNA accessibility
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
246 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 70 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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