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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
32
DNase-seq
3
Hi-C
Assay category
118
DNA binding
32
DNA accessibility
3
3D chromatin structure
Target of assay
99
histone
99
histone modification
54
narrow histone mark
45
broad histone mark
19
control
Date released
66
November, 2017
38
October, 2019
30
June, 2019
14
October, 2017
3
July, 2019
2
November, 2018
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
153
Homo sapiens
Biosample type
145
tissue
8
primary cell
Organ
153
brain
96
liver
78
kidney
49
connective tissue
49
musculature of body
48
pancreas
36
heart
36
limb
25
epithelium
19
vasculature
18
ureter
17
blood vessel
14
adipose tissue
10
artery
4
eye
3
embryo
2
nerve
2
vein
1
pituitary gland
1
spleen
Project
153
AMP
Genome assembly (visualization)
114
GRCh38
68
hg19
Lab
153
AMP-T2D consortium
Audit category:
4
missing controlled_by
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
153 results
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ChIP-seq
DNase-seq
Hi-C
tissue
brain
14
14
caudate nucleus
15
1
substantia nigra
16
layer of hippocampus
15
cingulate gyrus
14
+ See 37 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
choroid plexus epithelial cell
1
See all biosamples
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