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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
23
total RNA-seq
7
RRBS
6
Hi-C
6
small RNA-seq
5
ATAC-seq
4
single cell RNA-seq
3
pCHi-C
1
FAIRE-seq
1
WGBS
Assay category
257
DNA binding
33
Transcription
8
DNA methylation
6
3D chromatin structure
6
DNA accessibility
Target of assay
220
histone
220
histone modification
130
narrow histone mark
90
broad histone mark
37
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
35
May, 2019
26
August, 2017
25
July, 2019
16
October, 2017
14
February, 2020
10
June, 2019
7
March, 2020
1
February, 2023
1
January, 2018
1
May, 2022
Available data
300
bam
290
bigWig
263
bed narrowPeak
174
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
71
bigBed broadPeak
bed bed3+
35
tsv
23
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
313
Homo sapiens
Biosample type
287
tissue
26
primary cell
Organ
917
pancreas
751
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
68
blood
68
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
313
AMP
Genome assembly (visualization)
205
GRCh38
178
hg19
Lab
313
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
Audit category:
4
missing controlled_by
audit.ERROR.category!
inconsistent control
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
313 results
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ChIP-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
WGBS
tissue
skeletal muscle tissue
22
1
4
1
1
1
brain
20
1
1
1
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
skeletal muscle satellite cell
8
1
1
choroid plexus epithelial cell
3
1
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
skeletal muscle cell
2
1
+ See 2 more…
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