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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
222
ChIP-seq
65
DNase-seq
23
total RNA-seq
9
Hi-C
7
RRBS
6
small RNA-seq
5
ATAC-seq
4
single cell RNA-seq
3
pCHi-C
1
FAIRE-seq
1
WGBS
1
snATAC-seq
Assay category
222
DNA binding
72
DNA accessibility
33
Transcription
9
3D chromatin structure
8
DNA methylation
Target of assay
189
histone
189
histone modification
118
narrow histone mark
71
broad histone mark
33
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
73
June, 2019
May, 2019
28
July, 2019
26
August, 2017
16
October, 2017
14
February, 2020
7
March, 2020
2
May, 2022
2
November, 2018
1
February, 2023
1
January, 2018
Available data
265
bam
259
bigWig
232
bed narrowPeak
143
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
71
bigBed broadPeak
69
bed bed3+
35
tsv
23
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
347
Homo sapiens
Biosample type
312
tissue
35
primary cell
Organ
944
pancreas
764
liver
684
connective tissue
519
epithelium
491
adipose tissue
372
heart
349
kidney
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
347
AMP
Genome assembly (visualization)
240
GRCh38
206
hg19
Lab
347
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
audit.ERROR.category!
inconsistent control
month_released!
May, 2019
BIOSAMPLE
ASSAY
347 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
WGBS
snATAC-seq
tissue
brain
20
14
1
1
1
skeletal muscle tissue
22
1
4
1
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
muscle of arm
17
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primary cell
skeletal muscle satellite cell
8
1
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
skeletal muscle cell
2
1
1
+ See 4 more…
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