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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
Assay category
25
DNA binding
Target of assay
981
histone modification
980
histone
498
narrow histone mark
481
broad histone mark
473
transcription factor
343
control
106
RNA binding protein
89
recombinant protein
25
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
11
November, 2017
6
January, 2019
3
August, 2017
3
November, 2018
1
December, 2017
1
December, 2018
Available data
25
bam
25
bed narrowPeak
25
bigWig
25
fastq
23
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
25
Homo sapiens
Biosample type
21
cell line
3
in vitro differentiated cells
1
primary cell
Organ
13
liver
9
blood
9
bodily fluid
2
connective tissue
1
epithelium
Project
25
AMP
Genome assembly (visualization)
25
GRCh38
25
hg19
Lab
25
AMP-T2D consortium
Audit category:
inconsistent control
Audit category:
13
inconsistent control read length
inconsistent control run_type
audit.ERROR.category!
inconsistent control
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
cell line
HepG2
12
GM12878
9
in vitro differentiated cells
adipocyte
2
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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