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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
Assay category
27
DNA binding
Target of assay
1010
histone modification
1009
histone
511
narrow histone mark
497
broad histone mark
472
transcription factor
339
control
108
RNA binding protein
89
recombinant protein
27
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
15
November, 2017
7
November, 2018
January, 2019
3
August, 2017
1
December, 2017
1
December, 2018
Available data
27
bam
27
bed narrowPeak
27
bigWig
27
fastq
25
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
27
Homo sapiens
Biosample type
23
cell line
3
in vitro differentiated cells
1
primary cell
Organ
21
liver
3
blood
3
bodily fluid
2
connective tissue
1
epithelium
Project
27
AMP
Genome assembly (visualization)
27
hg19
25
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent control
month_released!
January, 2019
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
cell line
HepG2
20
GM12878
3
in vitro differentiated cells
adipocyte
2
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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