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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
Assay category
19
DNA binding
Target of assay
1017
histone modification
1016
histone
514
narrow histone mark
broad histone mark
486
transcription factor
343
control
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
9
November, 2017
5
November, 2018
2
August, 2017
2
January, 2019
1
December, 2018
Available data
19
bam
19
bed narrowPeak
19
bigWig
19
fastq
17
bigBed narrowPeak
3
bed broadPeak
3
bigBed broadPeak
Organism
19
Homo sapiens
Biosample type
17
cell line
2
in vitro differentiated cells
Organ
13
liver
4
blood
4
bodily fluid
2
connective tissue
Project
19
AMP
Genome assembly (visualization)
19
hg19
18
GRCh38
Lab
19
AMP-T2D consortium
Audit category:
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
8
inconsistent control read length
5
inconsistent control run_type
audit.ERROR.category!
inconsistent control
target.investigated_as!
broad histone mark
RNA binding protein
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
cell line
HepG2
13
GM12878
4
in vitro differentiated cells
adipocyte
2
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