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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
12
total RNA-seq
1
GRO-seq
Assay category
18
DNA binding
12
Transcription
Target of assay
10
histone
10
histone modification
6
narrow histone mark
5
control
4
broad histone mark
3
transcription factor
Date released
13
February, 2018
9
December, 2017
8
August, 2021
1
January, 2018
Available data
30
bam
25
bigWig
23
fastq
12
bed narrowPeak
12
tsv
3
bed bed3+
Organism
31
Homo sapiens
Biosample type
23
in vitro differentiated cells
8
cell line
Organ
856
pancreas
783
liver
660
connective tissue
488
adipose tissue
426
epithelium
381
heart
330
kidney
278
brain
229
vasculature
224
blood vessel
141
artery
117
limb
80
musculature of body
74
bone element
69
blood
69
bodily fluid
57
eye
43
nerve
31
embryo
24
spleen
20
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
31
AMP
Genome assembly (visualization)
25
GRCh38
25
hg19
1
hg18
Lab
31
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
assay_slims!
3D chromatin structure
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
cell line
H1-hESC
8
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