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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
35
DNase-seq
8
ATAC-seq
7
total RNA-seq
1
WGBS
Assay category
66
DNA binding
43
DNA accessibility
7
Transcription
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
31
June, 2019
7
May, 2019
6
February, 2021
3
February, 2020
1
July, 2019
Available data
113
bam
91
bed narrowPeak
90
bigWig
83
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
117
Homo sapiens
Biosample type
117
tissue
Organ
855
pancreas
756
liver
664
connective tissue
490
adipose tissue
426
epithelium
384
heart
328
kidney
280
brain
230
vasculature
225
blood vessel
141
artery
117
limb
81
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
117
AMP
Genome assembly (visualization)
95
GRCh38
95
hg19
Lab
117
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
assay_slims!
3D chromatin structure
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
117 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
12
1
muscle of arm
17
distal epiphysis of femur
1
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