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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
6
snATAC-seq
4
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
82
DNA accessibility
DNA binding
3
3D chromatin structure
1
DNA sequencing
Date released
579
February, 2021
283
May, 2020
273
August, 2021
200
May, 2022
194
February, 2023
183
June, 2019
162
July, 2018
148
May, 2021
115
August, 2017
106
July, 2019
61
October, 2019
59
September, 2020
49
April, 2018
47
September, 2023
45
March, 2020
41
September, 2018
39
November, 2019
24
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
15
February, 2018
15
May, 2023
10
November, 2020
8
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
2
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
123
tsv
76
bed narrowPeak
64
xls
57
txt
25
bam
17
bigWig
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
272
Homo sapiens
Biosample type
229
tissue
23
cell line
21
in vitro differentiated cells
Organ
130
kidney
92
heart
13
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
2
artery
2
pancreas
1
adipose tissue
Project
273
AMP
Genome assembly (visualization)
89
GRCh38
31
hg19
Lab
128
Katalin Susztak, Upenn
124
AMP-T2D consortium
17
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
273 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
2
1
1
H1-hESC
8
HEK293T
2
in vitro differentiated cells
neural progenitor cell
10
7
adipocyte
1
1
osteoblast
1
1
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