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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
DNA binding
43
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Date released
31
June, 2019
10
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
48
bam
43
bed narrowPeak
42
bigWig
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
35
bigBed narrowPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
55
Homo sapiens
Biosample type
55
tissue
Organ
662
pancreas
523
connective tissue
417
adipose tissue
329
epithelium
295
kidney
257
heart
238
liver
133
vasculature
131
blood vessel
107
artery
75
bone element
67
brain
56
eye
56
musculature of body
55
limb
20
lung
18
ureter
16
skeleton
13
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
55
AMP
Genome assembly (visualization)
48
GRCh38
47
hg19
Lab
55
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
55 results
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DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
muscle of arm
17
muscle of leg
12
1
tibial nerve
2
1
5
gastrocnemius medialis
1
4
tibial artery
2
1
1
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