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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
WGBS
18
RRBS
1
DNAme array
Assay category
1682
DNA binding
1613
Transcription
710
DNA accessibility
86
DNA methylation
26
3D chromatin structure
1
DNA sequencing
Date released
41
May, 2022
16
July, 2019
15
August, 2017
7
November, 2018
6
February, 2021
1
May, 2021
Available data
41
zippedFastqFolder
27
bed bedMethyl
27
bigBed bedMethyl
21
fastq
12
bam
11
bigWig
6
tsv
Organism
86
Homo sapiens
Biosample type
56
primary cell
29
tissue
1
cell line
Organ
53
pancreas
52
epithelium
heart
7
liver
6
adipose tissue
6
connective tissue
6
musculature of body
3
kidney
3
vasculature
2
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
Project
47
HPAP
39
AMP
Genome assembly (visualization)
16
hg19
11
GRCh38
Lab
47
Klaus Kaestner, Upenn
39
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
organ_slims!
heart
BIOSAMPLE
ASSAY
86 results
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WGBS
RRBS
DNAme array
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
+ See 6 more…
tissue
liver
3
1
skeletal muscle tissue
4
adipose tissue
3
pancreas
2
1
subcutaneous abdominal adipose tissue
3
+ See 9 more…
cell line
HepG2
1
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