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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
6
total RNA-seq
4
MeRIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
74
DNA binding
6
Transcription
2
DNA accessibility
Target of assay
31
control
30
histone
30
histone modification
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
2
nucleotide modification
Date released
581
February, 2021
406
November, 2017
402
August, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
194
February, 2023
192
June, 2019
162
July, 2018
159
May, 2022
117
May, 2019
94
July, 2019
90
December, 2017
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
82
bam
60
fastq
52
bigWig
47
bed narrowPeak
46
bigBed narrowPeak
6
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
86
Homo sapiens
Biosample type
78
tissue
8
primary cell
Organ
57
pancreas
29
connective tissue
23
adipose tissue
2
epithelium
Project
86
AMP
Genome assembly (visualization)
53
GRCh38
53
hg19
Lab
82
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
inconsistent ontology term
Audit category:
1
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
assay_title!
WGBS
BIOSAMPLE
ASSAY
86 results
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Clear Filters
ChIP-seq
total RNA-seq
MeRIP-seq
ATAC-seq
DNase-seq
tissue
body of pancreas
33
endocrine pancreas
16
subcutaneous adipose tissue
12
omental fat pad
11
islet of Langerhans
4
+ See 1 more…
primary cell
osteoblast
4
1
1
pancreatic acinar cell
2
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