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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1772
ChIP-seq
1403
total RNA-seq
489
ATAC-seq
354
single cell RNA-seq
208
DNase-seq
84
snATAC-seq
75
WGBS
48
pCHi-C
29
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
DNA methylation
18
Transcription
Date released
31
July, 2019
6
August, 2017
Available data
18
bam
18
bigWig
18
tsv
17
bed bedMethyl
17
bigBed bedMethyl
4
fastq
Organism
37
Homo sapiens
Biosample type
27
tissue
10
primary cell
Organ
7
musculature of body
6
brain
5
epithelium
5
liver
4
kidney
4
pancreas
3
adipose tissue
3
connective tissue
2
heart
1
eye
1
pericardium
1
vasculature
Project
37
AMP
Genome assembly (visualization)
35
hg19
18
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
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BIOSAMPLE
ASSAY
37 results
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RRBS
small RNA-seq
tissue
skeletal muscle tissue
4
1
body of pancreas
2
liver
1
1
right lobe of liver
2
brain
1
+ See 15 more…
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
kidney epithelial cell
1
mesenchymal stem cell of adipose
1
+ See 5 more…
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