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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
367
total RNA-seq
230
ATAC-seq
180
single cell RNA-seq
56
snATAC-seq
48
WGBS
31
DNase-seq
25
pCHi-C
13
Hi-C
8
RRBS
5
GRO-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
8
DNA methylation
Date released
7
July, 2019
1
August, 2017
Available data
8
bed bedMethyl
8
bigBed bedMethyl
1
fastq
Organism
8
Homo sapiens
Biosample type
tissue
8
primary cell
Organ
5
epithelium
2
kidney
1
brain
1
eye
1
liver
1
musculature of body
1
vasculature
Project
8
AMP
Genome assembly (visualization)
8
hg19
Lab
8
AMP-T2D consortium
Audit category:
inconsistent ontology term
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inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
8 results
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RRBS
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
kidney epithelial cell
1
renal cortical epithelial cell
1
+ See 3 more…
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