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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1160
total RNA-seq
919
ChIP-seq
428
ATAC-seq
233
single cell RNA-seq
196
DNase-seq
58
WGBS
57
snATAC-seq
47
pCHi-C
28
Hi-C
18
small RNA-seq
15
RRBS
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
15
DNA methylation
Date released
13
July, 2019
2
August, 2017
Available data
17
bed bedMethyl
17
bigBed bedMethyl
fastq
Organism
15
Homo sapiens
Biosample type
8
tissue
7
primary cell
Organ
5
epithelium
3
kidney
3
musculature of body
2
brain
2
pancreas
1
eye
1
heart
1
liver
1
pericardium
1
vasculature
Project
15
AMP
Genome assembly (visualization)
13
hg19
Lab
15
AMP-T2D consortium
Audit category:
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fastq
BIOSAMPLE
ASSAY
15 results
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RRBS
tissue
skeletal muscle tissue
2
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 2 more…
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
kidney epithelial cell
1
renal cortical epithelial cell
1
+ See 2 more…
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