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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1772
ChIP-seq
1403
total RNA-seq
489
ATAC-seq
354
single cell RNA-seq
208
DNase-seq
84
snATAC-seq
75
WGBS
48
pCHi-C
29
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
29
3D chromatin structure
Date released
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
9
August, 2021
8
July, 2019
8
March, 2020
3
October, 2019
3
October, 2022
2
February, 2023
1
August, 2022
1
December, 2018
1
March, 2019
1
March, 2023
1
November, 2019
Available data
28
fastq
21
zippedFastqFolder
18
hic
15
bedpe bed3+
6
bed bed3+
5
bigWig
5
hdf5
3
cool
1
bedpe
1
txt
Organism
112
Homo sapiens
Biosample type
66
primary cell
44
tissue
3
cell line
Organ
19
pancreas
10
lung
8
blood
8
bodily fluid
7
epithelium
7
kidney
7
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
Project
51
HPAP
33
AMP
18
T1D
10
LungMap
1
ITG
Genome assembly (visualization)
23
hg19
2
GRCh38
Lab
51
Klaus Kaestner, Upenn
23
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
7
Katalin Susztak, Upenn
3
Bing Ren, UCSD
1
ITG
Audit category:
33
audit script error
inconsistent ontology term
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
113 results
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Clear Filters
snATAC-seq
Hi-C
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
+ See 6 more…
tissue
islet of Langerhans
7
3
lung
10
kidney
6
1
pancreas
4
1
gastrocnemius medialis
4
+ See 7 more…
cell line
HepG2
2
Panc1
1
See all biosamples
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