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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
86
ChIP-seq
18
snATAC-seq
16
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
99
Transcription
86
DNA binding
29
DNA accessibility
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
151
May, 2021
41
May, 2020
23
February, 2023
16
January, 2021
4
March, 2020
Available data
178
bam
178
bigWig
92
tsv
86
bed narrowPeak
84
tagAlign
Organism
235
Homo sapiens
Biosample type
199
primary cell
31
tissue
5
cell line
Organ
30
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3907
AMP
324
HPAP
235
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
178
GRCh38
178
hg19
Lab
231
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
inconsistent replicate
BIOSAMPLE
ASSAY
235 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 29 more…
tissue
islet of Langerhans
7
2
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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