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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
66
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
60
transcription factor
20
RNA binding protein
16
recombinant protein
6
control
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
587
February, 2021
410
August, 2017
402
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
84
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
84
fastq
83
bam
76
bigWig
69
bed narrowPeak
69
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
84
Homo sapiens
Biosample type
57
cell line
26
tissue
1
primary cell
Organ
49
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
84
AMP
Genome assembly (visualization)
75
GRCh38
67
hg19
Lab
84
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
84 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
41
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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primary cell
pancreatic cell
1
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