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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
17
ATAC-seq
17
total RNA-seq
DNase-seq
4
single cell RNA-seq
3
pCHi-C
2
Capture-C
1
Hi-C
1
small RNA-seq
Assay category
68
DNA binding
22
Transcription
17
DNA accessibility
1
3D chromatin structure
Target of assay
37
histone
37
histone modification
22
transcription factor
20
broad histone mark
16
narrow histone mark
9
control
4
RNA binding protein
2
chromatin remodeller
Date released
67
August, 2017
11
February, 2021
9
February, 2023
7
July, 2019
5
November, 2020
4
August, 2021
2
April, 2018
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2018
1
June, 2019
Available data
77
bam
73
bigWig
57
fastq
46
bed narrowPeak
20
tsv
14
tagAlign
13
bed bed3+
6
bed bed3
4
bed bedgraph
2
bigBed narrowPeak
1
bedpe bed3+
1
hdf5
Organism
113
Homo sapiens
Biosample type
tissue
92
in vitro differentiated cells
21
primary cell
Organ
427
liver
400
epithelium
359
pancreas
113
connective tissue
97
vasculature
93
blood vessel
72
heart
69
blood
69
bodily fluid
68
artery
31
embryo
20
kidney
20
vein
16
brain
5
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
112
AMP
1
T1D
Genome assembly (visualization)
89
hg19
70
GRCh38
Lab
108
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
biosample_type!
tissue
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
pCHi-C
Capture-C
Hi-C
small RNA-seq
in vitro differentiated cells
adipocyte
67
8
5
1
chondrocyte
5
osteoblast
1
1
preadipocyte
1
1
cardiac fibroblast
1
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primary cell
osteoblast
2
5
1
pancreatic stellate cell
4
mesenchymal stem cell of adipose
1
1
adult endothelial progenitor cell
1
brain pericyte
1
+ See 5 more…
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