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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
ChIP-seq
29
DNase-seq
24
ATAC-seq
1
FAIRE-seq
Assay category
404
DNA binding
54
DNA accessibility
Target of assay
337
transcription factor
81
recombinant protein
70
RNA binding protein
62
histone
62
histone modification
32
chromatin remodeller
32
narrow histone mark
30
broad histone mark
2
other context
2
other post-translational modification
Date released
255
November, 2017
56
November, 2018
27
December, 2018
26
June, 2019
23
October, 2019
20
August, 2017
15
January, 2019
14
December, 2017
14
September, 2018
5
September, 2017
2
May, 2019
1
November, 2020
Available data
1277
bam
1208
bigWig
970
fastq
774
bed narrowPeak
458
bigBed narrowPeak
377
tsv
157
tagAlign
153
zippedFastqFolder
106
bed broadPeak
106
bigBed broadPeak
63
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
7
bed bed3
7
hic
6
bed bedgraph
6
bedpe bed3+
5
hdf5
4
tar
3
cool
3
txt
2
csv
1
vcf
Organism
458
Homo sapiens
Biosample type
tissue
355
cell line
86
primary cell
17
in vitro differentiated cells
Organ
309
liver
71
epithelium
54
blood
54
bodily fluid
29
pancreas
20
vasculature
17
blood vessel
13
vein
12
kidney
11
brain
8
connective tissue
3
eye
2
heart
2
musculature of body
Project
458
AMP
Genome assembly (visualization)
447
hg19
420
GRCh38
Lab
458
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
458 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
+ See 20 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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