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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
440
ChIP-seq
68
total RNA-seq
9
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
440
DNA binding
68
Transcription
11
DNA accessibility
1
DNA methylation
Target of assay
341
transcription factor
82
recombinant protein
71
control
63
RNA binding protein
30
chromatin remodeller
23
histone
23
histone modification
12
broad histone mark
11
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
69
February, 2021
61
November, 2018
27
December, 2018
23
January, 2019
16
October, 2019
8
August, 2021
2
March, 2020
Available data
520
bam
463
bigWig
426
fastq
383
bed narrowPeak
355
bigBed narrowPeak
80
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
tar
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
1
vcf
Organism
520
Homo sapiens
Biosample type
1903
tissue
564
primary cell
520
cell line
190
in vitro differentiated cells
3
stem cell
Organ
366
liver
66
artery
66
blood vessel
66
heart
66
vasculature
60
blood
60
bodily fluid
14
pancreas
8
embryo
2
epithelium
2
kidney
Project
520
AMP
Genome assembly (visualization)
452
hg19
406
GRCh38
Lab
520
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
assay_title!
Hi-C
BIOSAMPLE
ASSAY
520 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
359
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
Panc1
13
1
H1-hESC
8
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