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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
477
ChIP-seq
22
ATAC-seq
3
DNase-seq
Assay category
477
DNA binding
25
DNA accessibility
Target of assay
373
transcription factor
99
histone
99
histone modification
81
recombinant protein
68
RNA binding protein
50
narrow histone mark
48
broad histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
56
November, 2018
43
August, 2017
39
August, 2021
32
December, 2017
27
December, 2018
16
February, 2018
15
January, 2019
14
February, 2021
8
October, 2019
2
May, 2021
1
February, 2023
Available data
710
bam
630
bigWig
564
fastq
502
bed narrowPeak
372
bigBed narrowPeak
121
tsv
60
bed broadPeak
60
bigBed broadPeak
57
tagAlign
26
bed bed3+
6
bed bed3
6
bed bedgraph
3
tar
3
txt
2
bedpe bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
hic
1
vcf
Organism
502
Homo sapiens
Biosample type
980
tissue
383
cell line
270
primary cell
119
in vitro differentiated cells
2
stem cell
Organ
322
liver
54
blood
54
bodily fluid
45
connective tissue
17
epithelium
12
artery
12
blood vessel
12
embryo
12
heart
12
vasculature
9
pancreas
1
kidney
Project
502
AMP
Genome assembly (visualization)
497
hg19
453
GRCh38
Lab
485
AMP-T2D consortium
14
Bing Ren, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
40
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
502 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
307
1
GM12878
54
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
glomerular visceral epithelial cell
1
+ See 1 more…
in vitro differentiated cells
adipocyte
42
1
1
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
+ See 7 more…
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