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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
77
total RNA-seq
10
ATAC-seq
4
STARR-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
79
Transcription
11
DNA accessibility
3
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Date released
62
February, 2021
23
August, 2021
6
February, 2023
5
January, 2019
4
March, 2020
3
October, 2019
2
March, 2023
1
December, 2018
1
January, 2018
1
May, 2020
1
November, 2018
1
October, 2022
Available data
80
bam
80
tsv
73
bigWig
11
bed narrowPeak
7
fastq
3
bed bed3+
2
bigBed narrowPeak
1
bed bed3
1
bed bedMethyl
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
1
vcf
Organism
106
Homo sapiens
Biosample type
1604
tissue
755
primary cell
110
cell line
87
in vitro differentiated cells
6
stem cell
Organ
60
artery
60
blood vessel
60
heart
60
vasculature
23
liver
8
embryo
4
kidney
3
epithelium
2
pancreas
1
blood
1
bodily fluid
1
mammary gland
Project
103
AMP
5
T1D
2
community
Genome assembly (visualization)
82
hg19
80
GRCh38
Lab
88
AMP-T2D consortium
15
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed broadPeak
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
110 results
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total RNA-seq
ATAC-seq
STARR-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
smooth muscle cell of the coronary artery
52
8
HepG2
14
1
2
2
2
1
1
H1-hESC
8
EndoC_BH1
3
2
1
EndoC-BH1
1
1
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