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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
372
ChIP-seq
9
ATAC-seq
2
DNase-seq
Assay category
372
DNA binding
11
DNA accessibility
Target of assay
344
transcription factor
81
recombinant protein
62
RNA binding protein
30
chromatin remodeller
23
histone
23
histone modification
12
narrow histone mark
11
broad histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
14
August, 2021
14
February, 2021
8
October, 2019
Available data
520
bam
464
bigWig
427
fastq
383
bed narrowPeak
355
bigBed narrowPeak
80
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
383
Homo sapiens
Biosample type
985
tissue
383
cell line
270
primary cell
124
in vitro differentiated cells
2
stem cell
Organ
308
liver
54
blood
54
bodily fluid
12
artery
12
blood vessel
12
heart
12
vasculature
7
pancreas
1
epithelium
1
kidney
Project
383
AMP
Genome assembly (visualization)
379
hg19
337
GRCh38
Lab
369
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
383 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
307
1
GM12878
54
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
glomerular visceral epithelial cell
1
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