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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
391
ChIP-seq
68
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
Hi-C
1
WGBS
Assay category
391
DNA binding
68
Transcription
3
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
348
transcription factor
81
recombinant protein
62
RNA binding protein
30
chromatin remodeller
25
histone
25
histone modification
13
control
13
narrow histone mark
12
broad histone mark
2
other context
2
other post-translational modification
Date released
268
November, 2017
57
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
10
October, 2019
2
March, 2020
1
January, 2018
Available data
520
bam
464
bigWig
427
fastq
383
bed narrowPeak
355
bigBed narrowPeak
80
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
464
Homo sapiens
Biosample type
1769
tissue
575
primary cell
464
cell line
166
in vitro differentiated cells
3
stem cell
Organ
332
liver
56
artery
56
blood vessel
56
heart
56
vasculature
55
blood
55
bodily fluid
8
embryo
8
pancreas
2
epithelium
2
kidney
Project
464
AMP
Genome assembly (visualization)
459
hg19
398
GRCh38
Lab
450
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
464 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
H1-hESC
8
Panc1
6
1
1
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