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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
343
ChIP-seq
2
DNase-seq
Assay category
343
DNA binding
2
DNA accessibility
Target of assay
328
transcription factor
81
recombinant protein
61
RNA binding protein
30
chromatin remodeller
20
histone
20
histone modification
10
broad histone mark
narrow histone mark
2
other context
2
other post-translational modification
Date released
243
November, 2017
56
November, 2018
27
December, 2018
14
January, 2019
5
October, 2019
Available data
509
bam
451
bigWig
419
fastq
371
bed narrowPeak
345
bigBed narrowPeak
80
tsv
53
bed broadPeak
53
bigBed broadPeak
15
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
345
Homo sapiens
Biosample type
452
tissue
345
cell line
69
primary cell
12
in vitro differentiated cells
Organ
287
liver
53
blood
53
bodily fluid
4
pancreas
1
epithelium
1
kidney
Project
345
AMP
Genome assembly (visualization)
341
hg19
313
GRCh38
Lab
345
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
11
missing controlled_by
Audit category:
20
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
345 results
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ChIP-seq
DNase-seq
cell line
HepG2
287
GM12878
53
Panc1
3
1
glomerular visceral epithelial cell
1
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