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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
9
total RNA-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
pCHi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
72
DNA binding
11
Transcription
1
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
62
control
9
transcription factor
4
recombinant protein
3
RNA binding protein
1
broad histone mark
1
histone
1
histone modification
Date released
49
November, 2017
18
August, 2021
7
November, 2018
7
October, 2019
6
February, 2023
3
February, 2021
3
January, 2019
2
March, 2020
2
March, 2023
1
December, 2018
1
May, 2020
1
October, 2022
Available data
68
bam
60
fastq
12
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
3
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
1
vcf
Organism
96
Homo sapiens
Biosample type
895
tissue
448
primary cell
100
cell line
90
in vitro differentiated cells
6
stem cell
Organ
71
liver
8
pancreas
6
blood
6
bodily fluid
2
artery
2
blood vessel
2
heart
2
kidney
2
vasculature
1
epithelium
1
mammary gland
Project
93
AMP
5
T1D
2
community
Genome assembly (visualization)
hg19
407
GRCh38
Lab
75
AMP-T2D consortium
18
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
100 results
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Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
pCHi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
56
9
2
1
1
1
1
Panc1
7
EndoC_BH1
3
2
1
GM12878
6
EndoC-BH1
1
1
HEK293T
2
smooth muscle cell of the coronary artery
2
MCF-7
1
MIN6
1
fibroblast cell line
1
iPSC derived cell line
1
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